Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs11517075 | chr10:102945494 | T/A | 1.27E-7 | 173 | 15.82 | 13.6 | 3.17 | KM Plot |
| PAAD | rs11517076 | chr10:102945542 | G/A | 1.27E-7 | 173 | 15.82 | 13.6 | 3.17 | KM Plot |
| PAAD | rs11517077 | chr10:102947700 | C/T | 1.56E-7 | 172 | 15.82 | 14.03 | 3.17 | KM Plot |
| PAAD | rs115229735 | chr1:227556337 | T/C | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs115273856 | chr1:227393091 | G/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115302983 | chr1:227376624 | G/T | 4.49E-5 | 175 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11530594 | chr11:125577292 | T/C | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs11530601 | chr11:125717321 | G/C | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs11530604 | chr11:125740263 | A/C | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs11530764 | chr11:125577201 | A/G | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs11533186 | chr11:125577817 | C/G | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs115332333 | chr1:227329006 | G/A | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs115344261 | chr1:227420111 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11535722 | chr11:125740339 | G/C | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs115394535 | chr7:51544178 | C/T | 0 | 178 | 15.77 | 13.1 | 1.03 | KM Plot |